Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5F1D_chr19_1236751_1249825	0/0	t0002	489	44	2	8	27	0	7	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0003	489	11	11	0	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0004	489	1	0	1	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0005	489	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0006	489	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0007	489	1	1	0	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0008	489	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	t0009	489	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1E_chr20_59020475_59037335	0/0	t0001	3455	229	42	40	115	4	28	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	1/0	t0002	3455	75	29	14	20	5	6	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0003	3455	58	2	15	30	5	6	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0004	3455	7	0	3	0	2	2	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0005	3455	4	4	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0006	3455	4	0	0	0	0	4	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0007	3455	3	0	2	1	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0008	3455	2	0	2	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0009	3455	2	1	1	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0010	3455	2	2	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/1	t0011	3455	1	0	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0012	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0013	3455	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0014	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0015	3455	1	0	0	1	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0016	3455	1	0	0	1	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0017	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0018	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0019	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0020	3455	1	0	0	1	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0021	3455	1	0	1	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0022	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0023	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0024	3455	1	0	0	1	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0025	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0026	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0027	3455	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	t0028	3455	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5IF1_chr1_28231124_28243100	1/1	t0001	183	244	34	57	117	6	28	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	t0002	183	115	55	21	23	6	10	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	t0003	183	1	1	0	0	0	0	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5MC1_chr17_48887787_48900871	0/0	t0001	235	130	2	27	79	6	16	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	t0002	235	115	44	23	35	3	10	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/1	t0003	235	82	39	10	19	3	10	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	1/0	t0004	236	6	5	0	0	0	0	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	t0005	235	1	0	0	1	0	0	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC2_chr12_53660170_53681083	1/1	t0001	207	418	98	80	182	12	44	copy fasta	ATP5MC2	chr12	53660170	53681083
ATP5MC3_chr2_175171258_175186710	0/1	t0001	2156	254	43	46	131	9	24	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0002	2164	48	2	7	32	4	3	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0003	2164	22	6	4	0	1	11	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0004	2156	16	15	1	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	1/0	t0005	2159	8	7	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710