JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM11_chr11_45141639_45240109	0/0	t0083	7196	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0084	7198	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0085	7200	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0086	7186	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0087	7188	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0088	7192	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0089	7183	1	0	0	1	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0090	7191	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM11_chr11_45141639_45240109	0/0	t0091	7195	1	1	0	0	0	0	copy fasta	PRDM11	chr11	45141639	45240109
PRDM12_chr9_130659594_130687983	0/0	t0001	1375	163	36	38	59	11	19	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0002	1375	140	30	23	73	1	13	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/1	t0003	1375	45	3	13	9	6	13	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0004	1375	28	15	2	11	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0005	1375	6	5	1	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0006	1375	3	3	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0007	1375	2	2	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0008	1375	1	1	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	1/0	t0009	1375	1	0	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0010	1375	1	0	1	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0011	1375	1	1	0	0	0	0	copy fasta	PRDM12	chr9	130659594	130687983
PRDM12_chr9_130659594_130687983	0/0	t0012	1375	1	0	0	0	0	1	copy fasta	PRDM12	chr9	130659594	130687983
PRDM13_chr6_99601833_99620562	0/1	t0001	1006	210	67	36	73	12	21	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0002	1006	168	10	26	119	1	12	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	1/0	t0003	1006	26	1	15	3	3	3	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0004	1006	17	0	2	6	1	8	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0005	1006	6	6	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0006	1001	5	0	1	0	1	3	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0007	1006	3	3	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0008	1006	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0009	1006	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0010	1006	1	0	0	0	0	1	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0011	1006	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0012	1006	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0013	1006	1	0	0	1	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM13_chr6_99601833_99620562	0/0	t0014	1006	1	1	0	0	0	0	copy fasta	PRDM13	chr6	99601833	99620562
PRDM14_chr8_70046651_70076252	1/1	t0001	554	120	24	28	48	3	15	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0002	569	94	21	14	52	1	6	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0003	564	82	15	3	62	0	2	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0004	564	23	16	0	4	0	3	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0005	569	22	2	1	18	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0006	569	17	2	5	2	0	8	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0007	554	14	1	3	0	5	5	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0008	564	8	0	1	4	1	2	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0009	564	7	0	1	0	2	4	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0010	569	6	5	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0011	554	4	4	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0012	554	4	1	0	2	0	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0013	574	3	0	1	0	1	1	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0014	554	3	3	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0015	554	2	0	1	1	0	0	copy fasta	PRDM14	chr8	70046651	70076252