JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM14_chr8_70046651_70076252	0/0	t0016	554	2	2	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0017	574	2	1	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0018	574	2	0	0	1	1	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0019	554	2	0	0	0	0	2	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0020	554	1	0	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0021	564	1	0	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0022	554	1	0	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0023	554	1	1	0	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM14_chr8_70046651_70076252	0/0	t0024	551	1	0	1	0	0	0	copy fasta	PRDM14	chr8	70046651	70076252
PRDM15_chr21_41793225_41884344	1/0	t0001	3100	84	7	24	29	6	17	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/1	t0002	3100	73	7	16	38	3	8	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0003	3100	38	3	3	26	0	6	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0004	3100	36	0	1	33	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0005	3100	28	8	1	16	0	3	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0006	3100	16	15	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0007	3100	15	2	2	9	0	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0008	3100	14	12	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0009	3100	11	3	0	5	0	3	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0010	3100	10	8	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0011	3100	10	1	6	0	1	2	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0012	3100	8	5	3	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0013	3100	6	4	1	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0014	3093	5	0	2	1	1	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0015	3100	3	1	1	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0016	3100	3	3	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0017	3100	3	0	0	0	2	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0018	3100	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0019	3100	2	0	0	0	1	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0020	3100	2	0	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0021	3100	2	0	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0022	3100	2	0	0	2	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0023	3100	2	0	1	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0024	3100	2	0	2	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0025	3100	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0026	3100	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0027	3100	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0028	3100	2	2	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0029	3100	1	0	0	0	0	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0030	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0031	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0032	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0033	3100	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0034	3100	1	0	0	0	1	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0035	3100	1	0	1	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0036	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0037	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0038	3055	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0039	3100	1	0	0	0	0	1	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0040	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0041	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344