JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM15_chr21_41793225_41884344	0/0	t0042	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0043	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0044	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0045	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0046	3100	1	0	0	1	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0047	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0048	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM15_chr21_41793225_41884344	0/0	t0049	3100	1	1	0	0	0	0	copy fasta	PRDM15	chr21	41793225	41884344
PRDM16_chr1_3064203_3443621	0/0	t0001	4867	42	9	12	12	1	8	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0002	4867	13	4	2	3	2	2	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0003	4867	8	0	0	7	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0004	4867	7	6	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0005	4868	7	0	0	6	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0006	4867	6	0	4	0	1	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0007	4867	6	6	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0008	4868	5	1	3	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0009	4867	5	0	4	0	1	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0010	4867	4	4	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0011	4867	4	4	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0012	4867	3	2	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0013	4867	3	3	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0014	4867	3	3	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0015	4867	3	0	0	3	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0016	4867	3	0	1	0	1	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	1/0	t0017	4868	3	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0018	4867	3	0	0	3	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0019	4867	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0020	4867	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0021	4868	2	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0022	4868	2	1	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0023	4867	2	1	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0024	4867	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0025	4868	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0026	4867	2	0	0	2	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0027	4868	2	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0028	4865	2	2	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0029	4867	2	1	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0030	4868	2	0	2	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0031	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0032	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0033	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0034	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0035	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/1	t0036	4867	1	0	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0037	4867	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0038	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0039	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0040	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0041	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0042	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621