JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM16_chr1_3064203_3443621	0/0	t0043	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0044	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0045	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0046	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0047	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0048	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0049	4868	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0050	4867	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0051	4867	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0052	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0053	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0054	4867	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0055	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0056	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0057	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0058	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0059	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0060	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0061	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0062	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0063	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0064	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0065	4867	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0066	4868	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0067	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0068	4868	1	0	1	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0069	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0070	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0071	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0072	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0073	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0074	4868	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0075	4867	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0076	4868	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0077	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0078	4868	1	0	0	0	0	1	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0079	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0080	4868	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0081	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0082	4868	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0083	4868	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0084	4868	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0085	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0086	4867	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0087	4868	1	1	0	0	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM16_chr1_3064203_3443621	0/0	t0088	4867	1	0	0	1	0	0	copy fasta	PRDM16	chr1	3064203	3443621
PRDM1_chr6_106081336_106114938	0/0	t0001	2681	50	0	5	28	5	12	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0002	2678	41	1	8	31	1	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0003	2675	33	8	4	16	5	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0004	2677	23	1	7	1	0	14	copy fasta	PRDM1	chr6	106081336	106114938