JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM1_chr6_106081336_106114938	0/0	t0055	2675	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0056	2677	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0057	2676	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0058	2677	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0059	2677	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0060	2680	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0061	2678	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0062	2676	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0063	2675	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0064	2674	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0065	2678	1	0	1	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0066	2676	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0067	2676	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0068	2675	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0069	2676	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0070	2674	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0071	2675	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0072	2674	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0073	2675	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0074	2674	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0075	2673	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0076	2673	1	1	0	0	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0077	2673	1	0	0	0	0	1	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0078	2680	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM1_chr6_106081336_106114938	0/0	t0079	2685	1	0	0	1	0	0	copy fasta	PRDM1	chr6	106081336	106114938
PRDM2_chr1_13695188_13830079	0/1	t0001	2123	176	34	45	68	10	18	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	1/0	t0002	2123	57	8	5	29	3	11	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0003	2123	25	5	5	14	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0004	2123	12	11	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0005	2123	8	0	0	8	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0006	2123	6	6	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0007	2123	5	0	0	0	0	5	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0008	2123	3	2	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0009	2122	3	0	2	0	1	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0010	2123	3	2	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0011	2123	2	0	0	2	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0012	2123	2	0	2	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0013	2123	2	0	0	0	2	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0014	2123	2	0	0	2	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0015	2123	2	0	0	0	0	2	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0016	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0017	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0018	2123	1	0	1	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0019	2123	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0020	2123	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0021	2123	1	0	0	1	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0022	2123	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0023	2123	1	0	0	0	0	1	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0024	2191	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079
PRDM2_chr1_13695188_13830079	0/0	t0025	2123	1	1	0	0	0	0	copy fasta	PRDM2	chr1	13695188	13830079