JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM7_chr16_90051566_90082331	0/0	t0008	1915	6	0	1	5	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0009	1915	6	1	4	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0010	1915	6	5	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	1/0	t0011	1915	6	2	1	0	0	2	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0012	1915	4	0	0	4	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0013	1915	4	4	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0014	1915	4	0	0	4	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0015	1915	3	0	0	3	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0016	1915	3	2	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0017	1915	3	3	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0018	1915	2	0	2	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0019	1999	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0020	1915	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0021	1915	2	0	0	1	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0022	1915	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0023	1915	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0024	1915	1	0	0	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0025	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0026	1915	1	0	0	0	0	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0027	1915	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0028	1915	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0029	1915	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0030	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0031	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0032	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0033	1915	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0034	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0035	1915	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	t0036	1915	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM8_chr4_80192503_80209329	1/0	t0001	1061	123	15	35	53	5	14	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0002	1061	118	7	13	83	1	14	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0003	1061	43	19	0	21	1	2	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0004	1061	30	13	3	14	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/1	t0005	1062	25	0	6	11	4	3	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0006	1061	19	7	4	0	2	6	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0007	1061	18	16	2	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0008	1061	7	2	0	5	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0009	1061	5	2	2	0	1	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0010	1061	5	2	0	0	0	3	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0011	1063	5	0	0	5	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0012	1061	4	1	1	2	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0013	1062	2	0	0	0	0	2	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0014	1061	2	2	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0015	1061	2	0	0	2	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0016	1061	2	0	0	2	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0017	1061	1	0	0	1	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0018	1062	1	0	1	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0019	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0020	1061	1	0	1	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0021	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329