Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5MC3_chr2_175171258_175186710	0/0	t0006	2156	7	0	6	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0007	2164	5	1	3	0	1	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0008	2156	4	4	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0009	2164	3	0	0	2	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0010	2156	3	1	1	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0011	2164	2	0	0	2	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0012	2156	2	0	0	2	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0013	2156	1	0	0	1	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0014	2164	1	0	0	1	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0015	2164	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0016	2164	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0017	2156	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0018	2164	1	0	0	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0019	2164	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0020	2156	1	0	0	0	1	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0021	2156	1	0	0	1	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0022	2156	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0023	2156	1	0	0	1	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0024	2156	1	0	0	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0025	2156	1	0	0	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0026	2156	1	0	1	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0027	2156	1	0	1	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	t0028	2156	1	0	0	1	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5ME_chr4_667436_679276	1/1	t0001	94	392	92	79	160	17	42	copy fasta	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	t0002	94	2	0	1	0	1	0	copy fasta	ATP5ME	chr4	667436	679276
ATP5MF_chr7_99453195_99471167	1/1	t0001	159	292	49	47	139	11	44	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	t0002	159	33	25	2	5	1	0	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	t0003	159	21	18	3	0	0	0	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MGL_chr22_42634803_42645601	0/0	t0001	487	99	9	8	74	0	8	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0002	491	75	4	14	39	1	17	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	1/0	t0003	497	50	4	17	16	2	10	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0004	493	41	24	4	4	4	5	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0005	487	20	2	11	1	2	4	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0006	495	16	0	8	7	0	1	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0007	492	15	10	5	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0008	491	9	5	0	3	0	1	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0009	483	8	6	0	2	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0010	480	7	7	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0011	487	6	6	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/1	t0012	501	6	1	3	0	1	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0013	475	4	4	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0014	491	4	4	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0015	489	3	0	0	1	0	2	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0016	491	2	2	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0017	489	2	0	1	0	0	1	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0018	491	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0019	448	1	0	0	1	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0020	496	1	0	1	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0021	491	1	0	0	0	0	1	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0022	488	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601