JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRDM8_chr4_80192503_80209329	0/0	t0022	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0023	1061	1	0	0	1	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0024	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0025	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	t0026	1061	1	1	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM9_chr5_23502609_23533093	0/0	t0001	509	233	57	46	90	14	26	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/1	t0002	509	138	25	26	74	1	11	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	1/0	t0003	509	45	5	3	34	1	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	t0004	509	3	3	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	t0005	509	2	2	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	t0006	509	1	0	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	t0007	509	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	t0008	509	1	1	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDX1_chr1_45506051_45526884	1/1	t0001	346	350	79	79	132	18	40	copy fasta	PRDX1	chr1	45506051	45526884
PRDX1_chr1_45506051_45526884	0/0	t0002	344	7	7	0	0	0	0	copy fasta	PRDX1	chr1	45506051	45526884
PRDX1_chr1_45506051_45526884	0/0	t0003	346	6	0	0	6	0	0	copy fasta	PRDX1	chr1	45506051	45526884
PRDX1_chr1_45506051_45526884	0/0	t0004	346	1	0	1	0	0	0	copy fasta	PRDX1	chr1	45506051	45526884
PRDX2_chr19_12791823_12806800	1/1	t0001	329	412	90	72	184	18	46	copy fasta	PRDX2	chr19	12791823	12806800
PRDX3_chr10_119162720_119183812	0/1	t0001	783	200	50	31	103	7	8	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	t0002	783	129	13	30	61	7	18	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	1/0	t0003	783	90	34	15	25	2	13	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	t0004	783	3	3	0	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	t0005	783	2	0	2	0	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	t0006	783	1	0	0	0	0	1	copy fasta	PRDX3	chr10	119162720	119183812
PRDX3_chr10_119162720_119183812	0/0	t0007	783	1	0	0	1	0	0	copy fasta	PRDX3	chr10	119162720	119183812
PRDX4_chrX_23662493_23691397	1/1	t0001	141	343	71	62	170	13	25	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	t0002	141	3	3	0	0	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	t0003	141	2	2	0	0	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX4_chrX_23662493_23691397	0/0	t0004	140	1	0	0	1	0	0	copy fasta	PRDX4	chrX	23662493	23691397
PRDX5_chr11_64313121_64326811	1/1	t0001	216	358	83	62	153	13	45	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	t0002	216	24	3	9	11	1	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	t0003	216	2	2	0	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	t0004	216	1	0	1	0	0	0	copy fasta	PRDX5	chr11	64313121	64326811
PRDX5_chr11_64313121_64326811	0/0	t0005	216	1	0	0	0	0	1	copy fasta	PRDX5	chr11	64313121	64326811
PRDX6_chr1_173472335_173493815	1/0	t0001	1016	188	23	52	69	12	31	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/1	t0002	1016	176	51	8	105	2	9	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0003	1014	16	3	5	7	1	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0004	1016	14	14	0	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0005	1016	2	0	2	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0006	1016	2	0	1	0	1	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0007	1016	2	2	0	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0008	1016	1	0	0	1	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PRDX6_chr1_173472335_173493815	0/0	t0009	1016	1	1	0	0	0	0	copy fasta	PRDX6	chr1	173472335	173493815
PREB_chr2_27125756_27139636	0/1	t0001	874	276	44	53	133	14	31	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0002	875	94	30	15	42	2	5	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	1/0	t0003	874	5	4	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0004	875	4	4	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0005	881	3	3	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0006	874	3	3	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0007	874	2	2	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636