JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PREB_chr2_27125756_27139636	0/0	t0008	874	1	1	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0009	875	1	0	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0010	874	1	1	0	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0011	874	1	0	0	1	0	0	copy fasta	PREB	chr2	27125756	27139636
PREB_chr2_27125756_27139636	0/0	t0012	875	1	0	1	0	0	0	copy fasta	PREB	chr2	27125756	27139636
PRELID1_chr5_177298799_177311949	0/1	t0001	567	282	88	58	86	14	35	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	1/0	t0002	567	113	4	10	88	1	9	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0003	570	5	5	0	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0004	567	2	0	0	2	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0005	567	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0006	567	1	1	0	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0007	567	1	1	0	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0008	567	1	1	0	0	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0009	567	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0010	567	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0011	567	1	0	0	0	1	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID1_chr5_177298799_177311949	0/0	t0012	567	1	0	0	1	0	0	copy fasta	PRELID1	chr5	177298799	177311949
PRELID2_chr5_145751344_145840342	0/1	t0001	4285	112	38	16	42	4	11	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0002	4286	13	3	0	7	0	3	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0003	4284	13	7	6	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	1/0	t0004	4284	10	1	2	1	2	3	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0005	4285	9	0	0	8	0	1	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0006	4283	6	6	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0007	4283	6	0	0	4	0	2	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0008	4284	5	4	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0009	4282	5	0	5	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0010	4279	5	0	0	5	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0011	4285	4	0	1	3	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0012	4286	4	0	0	4	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0013	4285	3	2	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0014	4283	3	0	2	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0015	4285	2	2	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0016	4284	2	0	0	2	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0017	4285	2	1	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0018	4285	2	2	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0019	4285	2	0	2	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0020	4278	2	0	0	2	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0021	4288	2	2	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0022	4285	2	1	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0023	4281	2	2	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0024	4285	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0025	4281	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0026	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0027	4285	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0028	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0029	4285	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0030	4286	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0031	4286	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0032	4285	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0033	4307	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342