JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRELID2_chr5_145751344_145840342	0/0	t0034	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0035	4287	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0036	4286	1	0	0	0	0	1	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0037	4287	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0038	4285	1	0	0	0	0	1	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0039	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0040	4285	1	0	0	0	0	1	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0041	4285	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0042	4285	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0043	4285	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0044	4284	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0045	4283	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0046	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0047	4284	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0048	4286	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0049	4286	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0050	4285	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0051	4286	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0052	4282	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0053	4287	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0054	4284	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0055	4283	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0056	4282	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0057	4280	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0058	4280	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0059	4279	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0060	4278	1	0	0	1	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0061	4283	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0062	4282	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0063	4283	1	1	0	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0064	4284	1	0	1	0	0	0	copy fasta	PRELID2	chr5	145751344	145840342
PRELID2_chr5_145751344_145840342	0/0	t0065	4285	1	0	0	0	0	1	copy fasta	PRELID2	chr5	145751344	145840342
PRELID3A_chr18_12402929_12437234	0/1	t0001	1166	149	10	30	77	9	22	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0002	1153	118	32	16	63	0	7	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0003	1153	57	22	18	2	2	13	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0004	1166	44	23	12	9	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0005	1166	4	2	0	2	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0006	1154	4	1	0	3	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0007	1167	3	0	0	1	0	2	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0008	1166	2	2	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0009	1166	2	0	2	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0010	1153	2	1	1	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0011	1153	2	0	2	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0012	1166	1	1	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	1/0	t0013	1166	1	0	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0014	1153	1	0	0	0	1	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0015	1166	1	0	1	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0016	1153	1	1	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0017	1153	1	0	0	1	0	0	copy fasta	PRELID3A	chr18	12402929	12437234
PRELID3A_chr18_12402929_12437234	0/0	t0018	1153	1	1	0	0	0	0	copy fasta	PRELID3A	chr18	12402929	12437234