JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRELID3B_chr20_59028145_59047786	0/0	t0001	1920	98	15	20	48	1	14	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	1/0	t0002	1919	89	33	17	17	7	14	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0003	1918	65	4	14	40	0	7	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/1	t0004	1910	31	7	8	10	3	2	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0005	1911	31	2	8	16	0	5	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0006	1919	24	0	2	22	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0007	1919	22	1	0	21	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0008	1919	8	8	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0009	1920	7	0	2	1	3	1	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0010	1920	6	6	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0011	1918	5	3	1	0	0	1	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0012	1914	4	0	1	0	0	3	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0013	1917	3	0	2	0	0	1	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0014	1919	3	3	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0015	1921	2	0	1	1	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0016	1911	2	2	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0017	1918	1	0	0	1	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0018	1918	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0019	1918	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0020	1919	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0021	1919	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0022	1919	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0023	1918	1	0	0	1	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0024	1918	1	0	1	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0025	1920	1	0	1	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0026	1911	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0027	1914	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELID3B_chr20_59028145_59047786	0/0	t0028	1919	1	1	0	0	0	0	copy fasta	PRELID3B	chr20	59028145	59047786
PRELP_chr1_203470806_203496352	0/1	t0001	4624	120	19	24	63	4	9	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	1/0	t0002	4621	92	17	14	43	7	10	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0003	4624	65	8	14	30	2	11	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0004	4624	53	0	3	45	0	5	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0005	4624	12	0	12	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0006	4621	11	0	2	0	1	8	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0007	4624	6	5	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0008	4624	5	0	0	5	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0009	4624	5	4	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0010	4624	5	5	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0011	4624	4	4	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0012	4621	4	4	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0013	4624	4	4	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0014	4624	4	4	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0015	4624	3	3	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0016	4624	3	0	0	0	0	3	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0017	4621	2	0	0	2	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0018	4624	2	0	0	2	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0019	4624	2	1	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0020	4624	2	2	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0021	4624	2	2	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0022	4624	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352