JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRELP_chr1_203470806_203496352	0/0	t0023	4624	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0024	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0025	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0026	4624	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0027	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0028	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0029	4624	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0030	4624	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0031	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0032	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0033	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0034	4624	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0035	4621	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0036	4621	1	0	1	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0037	4621	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0038	4621	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0039	4621	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0040	4621	1	0	0	0	0	1	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0041	4621	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0042	4621	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0043	4624	1	1	0	0	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0044	4624	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PRELP_chr1_203470806_203496352	0/0	t0045	4624	1	0	0	1	0	0	copy fasta	PRELP	chr1	203470806	203496352
PREPL_chr2_44312607_44366494	1/0	t0001	3913	87	4	13	64	0	5	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0002	3912	87	3	26	37	6	15	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0003	3913	20	2	3	2	0	13	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0004	3908	20	0	0	18	0	2	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0005	3911	16	12	4	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0006	3912	12	10	2	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0007	3909	10	9	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0008	3911	10	10	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0009	3913	9	0	0	9	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0010	3913	8	0	0	8	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0011	3913	7	0	0	7	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0012	3910	7	2	4	0	1	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0013	3914	6	0	1	5	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0014	3911	6	5	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0015	3912	5	5	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0016	3913	4	2	2	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0017	3911	4	4	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0018	3912	3	1	2	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0019	3909	3	3	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0020	3912	3	3	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0021	3912	3	0	0	3	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0022	3911	3	3	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0023	3914	2	0	0	2	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0024	3913	2	2	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0025	3912	2	0	0	2	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0026	3913	2	0	0	1	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0027	3912	2	1	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494