JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PREPL_chr2_44312607_44366494	0/0	t0028	3912	2	0	2	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0029	3908	2	0	0	0	0	2	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0030	3912	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0031	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0032	3913	1	0	0	0	1	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0033	3912	1	0	0	0	1	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0034	3913	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0035	3911	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0036	3911	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0037	3912	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0038	3912	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0039	3912	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0040	3913	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0041	3911	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0042	3910	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0043	3914	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0044	3908	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0045	3872	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0046	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0047	3913	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0048	3913	1	0	0	0	1	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0049	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0050	3908	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0051	3912	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0052	3912	1	0	0	0	0	1	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0053	3912	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0054	3912	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0055	3908	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0056	3912	1	0	1	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/1	t0057	3909	1	0	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0058	3909	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0059	3907	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0060	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0061	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0062	3911	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0063	3912	1	1	0	0	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREPL_chr2_44312607_44366494	0/0	t0064	3913	1	0	0	1	0	0	copy fasta	PREPL	chr2	44312607	44366494
PREP_chr6_105268218_105408082	0/1	t0001	5118	74	7	15	28	3	20	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0002	5118	9	7	1	0	0	1	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0003	5118	8	0	0	8	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0004	5122	8	3	1	1	1	2	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0005	5119	7	2	2	0	1	2	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0006	5123	4	0	0	4	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0007	5126	4	4	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0008	5118	4	4	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0009	5111	4	4	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0010	5122	3	0	1	2	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0011	5119	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	1/0	t0012	5118	3	0	1	0	1	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0013	5124	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082