JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PREP_chr6_105268218_105408082	0/0	t0014	5118	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0015	5122	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0016	5124	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0017	5122	3	3	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0018	5124	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0019	5119	2	0	0	2	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0020	5118	2	0	1	0	1	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0021	5118	2	0	0	2	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0022	5122	2	0	0	0	0	2	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0023	5126	2	0	1	0	0	1	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0024	5119	2	0	2	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0025	5120	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0026	5112	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0027	5111	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0028	5120	2	1	1	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0029	5118	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0030	5121	2	2	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0031	5118	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0032	5118	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0033	5114	1	0	1	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0034	5126	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0035	5124	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0036	5126	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0037	5119	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0038	5112	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0039	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0040	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0041	5115	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0042	5118	1	0	0	0	0	1	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0043	5118	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0044	5118	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0045	5111	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0046	5121	1	0	1	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0047	5122	1	0	0	0	0	1	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0048	5118	1	0	0	1	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0049	5122	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0050	5126	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0051	5126	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0052	5109	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0053	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0054	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0055	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0056	5115	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0057	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0058	5122	1	0	0	0	1	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0059	5126	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0060	5126	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0061	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0062	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0063	5109	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082