JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PREP_chr6_105268218_105408082	0/0	t0064	5110	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0065	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0066	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0067	5118	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0068	5118	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0069	5122	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREP_chr6_105268218_105408082	0/0	t0070	5119	1	1	0	0	0	0	copy fasta	PREP	chr6	105268218	105408082
PREX1_chr20_48619252_48832999	0/0	t0001	1773	86	29	14	29	4	10	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	1/0	t0002	1773	76	7	15	38	5	10	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/1	t0003	1773	44	4	10	19	3	7	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0004	1773	25	13	7	2	0	3	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0005	1773	9	0	0	9	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0006	1784	6	6	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0007	1773	5	5	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0008	1773	3	0	0	2	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0009	1773	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0010	1773	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0011	1773	1	0	1	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0012	1773	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0013	1773	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0014	1773	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0015	1773	1	0	0	0	0	1	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0016	1773	1	0	1	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0017	1773	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0018	1773	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0019	1773	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0020	1773	1	0	0	1	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0021	1784	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX1_chr20_48619252_48832999	0/0	t0022	1784	1	1	0	0	0	0	copy fasta	PREX1	chr20	48619252	48832999
PREX2_chr8_67947046_68242032	0/1	t0001	6003	39	3	9	14	2	10	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0002	6005	37	11	4	21	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0003	6003	16	3	5	7	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	1/0	t0004	6004	12	1	5	3	1	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0005	6004	8	1	2	0	1	4	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0006	6008	6	5	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0007	6006	5	1	1	3	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0008	6003	4	3	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0009	6004	4	4	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0010	6005	4	3	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0011	6002	3	3	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0012	6002	3	1	0	0	0	2	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0013	6003	3	3	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0014	6007	3	3	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0015	6004	3	3	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0016	6002	2	2	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0017	6003	2	1	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0018	6005	2	1	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0019	6003	2	1	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0020	6005	2	2	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0021	6005	2	2	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032