JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PREX2_chr8_67947046_68242032	0/0	t0022	6003	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0023	6007	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0024	6002	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0025	6003	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0026	6003	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0027	6004	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0028	6004	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0029	6008	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0030	6006	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0031	6003	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0032	6003	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0033	6003	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0034	6003	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0035	6003	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0036	6003	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0037	6003	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0038	6004	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0039	6004	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0040	6004	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0041	6004	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0042	6004	1	0	0	1	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0043	6004	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0044	6005	1	0	0	0	0	1	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0045	6006	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0046	6006	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0047	6005	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0048	6003	1	0	1	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PREX2_chr8_67947046_68242032	0/0	t0049	6005	1	1	0	0	0	0	copy fasta	PREX2	chr8	67947046	68242032
PRF1_chr10_70592348_70607741	1/0	t0001	833	175	20	46	81	7	20	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0002	833	153	22	17	97	3	14	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/1	t0003	832	40	10	7	11	3	8	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0004	833	28	14	7	2	2	3	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0005	831	9	9	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0006	833	7	7	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0007	832	7	5	0	1	0	1	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0008	830	6	1	3	0	2	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0009	832	5	5	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0010	831	2	1	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0011	833	2	0	0	2	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0012	832	2	2	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0013	833	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0014	833	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0015	832	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0016	831	1	1	0	0	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0017	833	1	0	0	0	1	0	copy fasta	PRF1	chr10	70592348	70607741
PRF1_chr10_70592348_70607741	0/0	t0018	833	1	0	0	1	0	0	copy fasta	PRF1	chr10	70592348	70607741
PRG2_chr11_57381780_57395650	0/1	t0001	763	343	45	64	175	18	40	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	1/0	t0002	763	43	38	1	3	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	t0003	763	6	0	0	6	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	t0004	763	4	3	1	0	0	0	copy fasta	PRG2	chr11	57381780	57395650