JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRG2_chr11_57381780_57395650	0/0	t0005	763	3	3	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	t0006	763	3	3	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	t0007	763	1	1	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG2_chr11_57381780_57395650	0/0	t0008	763	1	1	0	0	0	0	copy fasta	PRG2	chr11	57381780	57395650
PRG3_chr11_57371769_57386150	1/1	t0001	192	391	93	74	166	18	38	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	t0002	192	2	2	0	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	t0003	192	2	0	2	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG3_chr11_57371769_57386150	0/0	t0004	192	1	1	0	0	0	0	copy fasta	PRG3	chr11	57371769	57386150
PRG4_chr1_186291279_186319567	1/0	t0001	835	259	45	43	131	8	31	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/1	t0002	835	83	14	31	24	3	10	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	t0003	835	79	32	5	32	3	7	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	t0004	833	3	0	0	3	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	t0005	835	2	2	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	t0006	835	1	0	1	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRG4_chr1_186291279_186319567	0/0	t0007	835	1	1	0	0	0	0	copy fasta	PRG4	chr1	186291279	186319567
PRH1_chr12_10875965_10889255	0/1	t0001	149	396	91	84	168	16	36	copy fasta	PRH1	chr12	10875965	10889255
PRH1_chr12_10875965_10889255	0/0	t0002	149	1	1	0	0	0	0	copy fasta	PRH1	chr12	10875965	10889255
PRH2_chr12_10924236_10939845	0/0	t0001	2678	190	24	41	92	9	24	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/1	t0002	2676	79	21	15	34	2	6	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0003	2677	54	26	21	0	4	3	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0004	2677	12	12	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0005	2677	10	0	1	8	0	1	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0006	2678	7	0	0	7	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0007	2676	3	0	1	0	0	2	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0008	2676	3	0	0	3	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0009	2678	3	3	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0010	2677	2	0	0	0	0	2	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0011	2676	2	2	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0012	2678	2	0	0	2	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0013	2678	2	0	0	0	0	2	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0014	2678	2	0	0	2	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0015	2676	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0016	2676	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0017	2676	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0018	2676	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0019	2676	1	0	0	0	0	1	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0020	2676	1	0	1	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0021	2678	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0022	2678	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0023	2678	1	0	0	0	1	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0024	2678	1	0	1	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0025	2678	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0026	2678	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0027	2678	1	0	0	1	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0028	2678	1	0	0	0	0	1	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0029	2677	1	0	1	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRH2_chr12_10924236_10939845	0/0	t0030	2677	1	1	0	0	0	0	copy fasta	PRH2	chr12	10924236	10939845
PRICKLE1_chr12_42451757_42594746	0/0	t0001	3382	75	7	13	35	2	18	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0002	3384	45	11	13	20	1	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0003	3383	39	4	15	15	2	3	copy fasta	PRICKLE1	chr12	42451757	42594746