Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5MGL_chr22_42634803_42645601	0/0	t0023	484	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	t0024	495	1	1	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MG_chr11_118396606_118414847	1/1	t0001	810	296	72	33	141	11	37	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0002	810	26	4	3	15	3	1	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0003	810	10	8	2	0	0	0	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0004	810	1	1	0	0	0	0	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0005	810	1	0	0	1	0	0	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0006	810	1	0	0	1	0	0	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MG_chr11_118396606_118414847	0/0	t0007	810	1	1	0	0	0	0	copy fasta	ATP5MG	chr11	118396606	118414847
ATP5MJ_chr14_103907288_103926529	1/1	t0001	439	392	81	67	192	11	39	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0002	439	24	6	9	9	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0003	439	18	2	7	0	5	4	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0004	439	2	2	0	0	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0005	439	1	0	1	0	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0006	439	1	1	0	0	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0007	439	1	0	0	1	0	0	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	t0008	439	1	0	0	0	0	1	copy fasta	ATP5MJ	chr14	103907288	103926529
ATP5MK_chr10_103384050_103401475	1/0	t0001	484	260	71	50	119	9	10	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/1	t0002	484	170	21	25	93	5	25	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	t0003	484	7	0	3	0	3	1	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	t0004	484	1	0	0	0	1	0	copy fasta	ATP5MK	chr10	103384050	103401475
ATP5PB_chr1_111444464_111467773	0/0	t0001	1858	131	15	9	88	2	17	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	1/1	t0002	1858	128	22	37	48	8	11	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0003	1859	101	7	8	68	3	15	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0004	1858	13	13	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0005	1858	9	9	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0006	1859	9	8	1	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0007	1858	8	1	4	3	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0008	1858	6	6	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0009	1858	4	4	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0010	1859	3	1	0	2	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0011	1858	3	3	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0012	1858	2	1	1	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0013	1858	2	0	1	0	1	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0014	1858	2	0	2	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0015	1858	2	2	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0016	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0017	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0018	1859	1	0	0	1	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0019	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0020	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0021	1859	1	0	0	0	0	1	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0022	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0023	1858	1	0	0	1	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0024	1859	1	0	0	1	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0025	1859	1	0	1	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PB_chr1_111444464_111467773	0/0	t0026	1858	1	1	0	0	0	0	copy fasta	ATP5PB	chr1	111444464	111467773
ATP5PD_chr17_75033863_75051969	1/1	t0001	124	268	45	68	96	15	42	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PD_chr17_75033863_75051969	0/0	t0002	124	152	48	12	85	1	6	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PD_chr17_75033863_75051969	0/0	t0003	124	6	6	0	0	0	0	copy fasta	ATP5PD	chr17	75033863	75051969