JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRICKLE1_chr12_42451757_42594746	0/0	t0004	3382	12	5	4	1	1	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0005	3391	11	1	1	8	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0006	3383	8	0	2	6	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0007	3383	7	3	2	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0008	3382	7	0	2	5	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0009	3383	5	5	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0010	3390	5	0	2	3	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0011	3382	5	0	0	5	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0012	3383	4	0	0	0	0	4	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0013	3368	4	4	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0014	3382	4	4	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0015	3383	4	4	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0016	3392	4	0	2	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0017	3390	3	1	1	0	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/1	t0018	3391	3	0	1	0	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0019	3382	3	3	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0020	3384	3	3	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	1/0	t0021	3383	3	2	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0022	3384	3	0	0	2	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0023	3384	2	2	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0024	3384	2	0	0	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0025	3384	2	0	0	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0026	3383	2	0	1	0	1	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0027	3385	2	0	0	1	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0028	3384	2	1	1	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0029	3384	2	0	0	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0030	3383	2	0	0	0	0	2	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0031	3382	2	0	0	2	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0032	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0033	3384	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0034	3384	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0035	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0036	3382	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0037	3382	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0038	3382	1	0	0	0	1	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0039	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0040	3384	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0041	3384	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0042	3384	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0043	3382	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0044	3383	1	0	0	0	0	1	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0045	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0046	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0047	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0048	3382	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0049	3383	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0050	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0051	3383	1	0	0	0	1	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0052	3383	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0053	3382	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746