JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRICKLE1_chr12_42451757_42594746	0/0	t0054	3391	1	0	0	1	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0055	3390	1	0	0	0	1	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE1_chr12_42451757_42594746	0/0	t0056	3382	1	1	0	0	0	0	copy fasta	PRICKLE1	chr12	42451757	42594746
PRICKLE2_chr3_64087236_64230466	0/1	t0001	7412	71	9	15	35	2	9	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0002	7412	30	0	3	25	1	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	1/0	t0003	7413	17	11	2	3	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0004	7412	16	1	4	11	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0005	7412	15	0	11	2	1	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0006	7413	10	0	0	10	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0007	7413	8	0	0	8	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0008	7412	8	1	0	7	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0009	7413	8	7	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0010	7412	7	0	6	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0011	7413	7	0	4	3	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0012	7412	6	5	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0013	7412	6	5	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0014	7412	6	5	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0015	7412	5	0	0	5	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0016	7413	5	0	0	0	0	5	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0017	7413	5	0	1	1	0	3	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0018	7412	4	0	3	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0019	7404	4	4	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0020	7412	3	0	1	0	2	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0021	7404	3	3	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0022	7412	3	1	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0023	7413	3	3	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0024	7413	3	3	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0025	7413	3	3	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0026	7403	2	2	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0027	7411	2	0	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0028	7412	2	1	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0029	7412	2	0	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0030	7412	2	0	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0031	7412	2	2	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0032	7413	2	0	0	0	2	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0033	7413	2	2	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0034	7412	2	1	0	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0035	7412	2	0	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0036	7412	2	0	2	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0037	7412	2	2	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0038	7413	2	0	0	2	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0039	7414	2	0	1	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0040	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0041	7411	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0042	7403	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0043	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0044	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0045	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0046	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0047	7412	1	0	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466