JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRICKLE2_chr3_64087236_64230466	0/0	t0048	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0049	7412	1	0	0	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0050	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0051	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0052	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0053	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0054	7412	1	0	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0055	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0056	7412	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0057	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0058	7412	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0059	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0060	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0061	7413	1	0	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0062	7413	1	0	0	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0063	7413	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0064	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0065	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0066	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0067	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0068	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0069	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0070	7413	1	0	0	0	1	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0071	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0072	7413	1	0	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0073	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0074	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0075	7413	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0076	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0077	7413	1	0	1	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0078	7414	1	0	0	0	0	1	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0079	7414	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0080	7414	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0081	7414	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0082	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0083	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0084	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0085	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0086	7403	1	1	0	0	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0087	7411	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0088	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0089	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0090	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0091	7412	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0092	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0093	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0094	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE2_chr3_64087236_64230466	0/0	t0095	7413	1	0	0	1	0	0	copy fasta	PRICKLE2	chr3	64087236	64230466
PRICKLE3_chrX_49169802_49191373	1/1	t0001	948	247	62	47	93	11	32	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	t0002	948	21	16	4	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373