JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRICKLE3_chrX_49169802_49191373	0/0	t0003	946	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	t0004	948	1	1	0	0	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	t0005	948	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	t0006	949	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE3_chrX_49169802_49191373	0/0	t0007	950	1	0	0	1	0	0	copy fasta	PRICKLE3	chrX	49169802	49191373
PRICKLE4_chr6_41775782_41792452	1/1	t0001	552	449	98	84	204	16	45	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	t0002	552	2	0	0	2	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	t0003	552	2	2	0	0	0	0	copy fasta	PRICKLE4	chr6	41775782	41792452
PRICKLE4_chr6_41775782_41792452	0/0	t0004	552	1	0	0	0	0	1	copy fasta	PRICKLE4	chr6	41775782	41792452
PRIM1_chr12_56726580_56757323	1/1	t0001	161	336	90	62	128	16	38	copy fasta	PRIM1	chr12	56726580	56757323
PRIM2_chr6_57312630_57651850	0/1	t0001	774	119	34	17	55	4	8	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	1/0	t0002	774	98	17	19	42	6	13	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0003	773	52	7	11	30	2	2	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0004	772	13	9	3	1	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0005	775	8	8	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0006	773	2	2	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0007	774	2	2	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0008	774	2	2	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0009	774	1	1	0	0	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0010	773	1	0	0	1	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0011	774	1	0	0	1	0	0	copy fasta	PRIM2	chr6	57312630	57651850
PRIM2_chr6_57312630_57651850	0/0	t0012	774	1	0	0	0	0	1	copy fasta	PRIM2	chr6	57312630	57651850
PRIMA1_chr14_93713298_93793485	0/0	t0001	3252	162	29	39	64	11	19	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0002	3252	96	20	10	48	0	18	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0003	3254	59	0	5	53	0	1	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0004	3252	10	2	7	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0005	3252	7	6	1	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0006	3252	7	7	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0007	3256	6	5	1	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0008	3256	5	4	1	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0009	3252	4	4	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0010	3252	3	0	2	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0011	3252	3	0	0	0	0	3	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0012	3253	3	0	0	3	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/1	t0013	3252	3	0	2	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0014	3252	3	3	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0015	3254	2	2	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0016	3254	2	2	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0017	3252	2	0	0	0	1	1	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0018	3254	2	2	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0019	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0020	3252	1	0	0	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0021	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0022	3254	1	0	0	0	1	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0023	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0024	3252	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0025	3252	1	0	0	0	0	1	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0026	3252	1	0	0	1	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0027	3252	1	0	0	0	0	1	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	t0028	3252	1	0	0	0	1	0	copy fasta	PRIMA1	chr14	93713298	93793485