JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAB1_chr12_119663133_119686619	0/0	t0003	1407	6	6	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0004	1407	2	2	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0005	1407	2	0	0	2	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0006	1407	2	2	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0007	1407	1	0	0	0	1	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0008	1407	1	0	0	0	0	1	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0009	1407	1	1	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0010	1407	1	1	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0011	1407	1	0	1	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	t0012	1407	1	1	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB2_chr1_147150106_147177470	0/1	t0001	4524	123	20	21	60	5	16	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0002	4524	75	1	7	63	1	3	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0003	4525	41	14	12	8	0	7	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0004	4524	39	2	5	25	3	4	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	1/0	t0005	4525	31	1	12	11	5	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0006	4530	18	8	3	0	2	5	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0007	4523	14	14	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0008	4524	10	10	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0009	4525	10	0	0	10	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0010	4524	10	0	3	3	0	4	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0011	4525	7	0	7	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0012	4524	6	6	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0013	4524	5	0	0	5	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0014	4524	5	4	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0015	4524	3	0	0	3	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0016	4524	3	3	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0017	4523	3	3	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0018	4524	3	0	1	0	1	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0019	4524	2	0	0	0	0	2	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0020	4524	2	0	0	2	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0021	4524	2	0	0	2	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0022	4524	1	0	0	1	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0023	4524	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0024	4523	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0025	4525	1	0	0	0	1	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0026	4524	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0027	4524	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0028	4524	1	0	0	1	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0029	4524	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0030	4525	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0031	4525	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0032	4525	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0033	4524	1	1	0	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0034	4525	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0035	4525	1	0	0	0	0	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0036	4524	1	0	0	0	0	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0037	4524	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0038	4524	1	0	0	0	0	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	t0039	4524	1	0	1	0	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKACA_chr19_14086688_14122762	1/1	t0001	1640	309	63	63	123	13	45	copy fasta	PRKACA	chr19	14086688	14122762