Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP5PD_chr17_75033863_75051969	0/0	t0004	124	1	1	0	0	0	0	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PD_chr17_75033863_75051969	0/0	t0005	124	1	0	0	1	0	0	copy fasta	ATP5PD	chr17	75033863	75051969
ATP5PF_chr21_25719500_25739904	1/1	t0001	200	405	83	70	194	16	40	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PF_chr21_25719500_25739904	0/0	t0002	200	10	10	0	0	0	0	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PF_chr21_25719500_25739904	0/0	t0003	200	1	1	0	0	0	0	copy fasta	ATP5PF	chr21	25719500	25739904
ATP5PO_chr21_33898453_33920804	1/1	t0001	115	432	94	78	200	18	40	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	t0002	115	2	0	0	2	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP5PO_chr21_33898453_33920804	0/0	t0003	115	2	2	0	0	0	0	copy fasta	ATP5PO	chr21	33898453	33920804
ATP6AP1_chrX_154423677_154441516	1/1	t0001	642	199	13	41	108	8	27	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0002	642	43	42	1	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0003	642	25	3	11	11	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0004	643	19	17	2	0	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0005	642	13	1	7	1	1	3	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0006	642	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0007	642	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP1_chrX_154423677_154441516	0/0	t0008	643	1	0	0	1	0	0	copy fasta	ATP6AP1	chrX	154423677	154441516
ATP6AP2_chrX_40575970_40611848	1/1	t0001	1190	223	38	42	111	9	21	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0002	1190	41	7	11	23	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0003	1190	29	28	1	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0004	1190	1	1	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0005	1190	1	1	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0006	1189	1	0	0	1	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0007	1190	1	1	0	0	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0008	1190	1	0	0	1	0	0	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6AP2_chrX_40575970_40611848	0/0	t0009	1190	1	0	0	0	0	1	copy fasta	ATP6AP2	chrX	40575970	40611848
ATP6V0A1_chr17_42453878_42527579	1/1	t0001	1593	207	45	53	72	8	27	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0002	1593	62	9	8	37	4	4	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0003	1593	15	11	4	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0004	1593	8	8	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0005	1593	7	0	0	4	0	3	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0006	1593	6	6	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0007	1593	5	5	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0008	1593	2	2	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0009	1593	1	0	1	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0010	1593	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0011	1593	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0012	1593	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0013	1593	1	0	0	1	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0014	1593	1	1	0	0	0	0	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0015	1593	1	0	0	0	0	1	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A1_chr17_42453878_42527579	0/0	t0016	1593	1	0	0	0	0	1	copy fasta	ATP6V0A1	chr17	42453878	42527579
ATP6V0A2_chr12_123707353_123766755	0/1	t0001	3937	87	18	17	29	4	18	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0002	3937	36	6	13	4	3	10	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0003	3937	11	11	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0004	3937	11	10	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0005	3937	9	5	2	0	0	2	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0006	3937	7	4	3	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0007	3937	5	5	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0008	3937	4	0	1	3	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0009	3937	4	4	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755