JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKACA_chr19_14086688_14122762	0/0	t0002	1640	20	15	1	4	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0003	1640	6	0	5	0	1	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0004	1640	5	5	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0005	1636	3	3	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0006	1640	2	2	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0007	1640	2	0	0	2	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0008	1640	2	0	0	2	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0009	1640	2	0	0	2	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0010	1640	2	2	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0011	1640	1	0	0	1	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0012	1640	1	1	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0013	1640	1	0	1	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0014	1640	1	0	0	0	0	1	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	t0015	1640	1	1	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACB_chr1_84139271_84243498	0/0	t0001	3285	199	24	50	94	11	20	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	1/1	t0002	3285	60	18	12	17	3	8	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0003	3285	25	21	3	0	1	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0004	3284	11	11	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0005	3285	4	3	1	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0006	3285	3	3	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0007	3285	2	2	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0008	3285	2	2	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0009	3285	2	2	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0010	3285	2	0	0	2	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0011	3285	1	0	1	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0012	3285	1	1	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0013	3285	1	0	0	0	0	1	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0014	3285	1	0	0	0	0	1	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0015	3285	1	0	0	1	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0016	3285	1	1	0	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0017	3285	1	0	1	0	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0018	3285	1	0	0	0	1	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0019	3285	1	0	0	1	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	t0020	3285	1	0	0	1	0	0	copy fasta	PRKACB	chr1	84139271	84243498
PRKACG_chr9_69007504_69019113	1/1	t0001	555	282	51	43	142	9	35	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0002	555	99	11	15	67	1	5	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0003	557	81	32	30	6	8	5	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0004	555	5	0	0	5	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0005	555	3	3	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0006	555	2	1	0	1	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0007	555	1	0	0	0	0	1	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0008	555	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0009	557	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	t0010	555	1	0	0	1	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKAG1_chr12_48997274_49023776	1/1	t0001	662	295	65	48	141	12	27	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	t0002	662	11	11	0	0	0	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	t0003	662	6	6	0	0	0	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	t0004	692	1	0	0	1	0	0	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG1_chr12_48997274_49023776	0/0	t0005	662	1	0	0	0	0	1	copy fasta	PRKAG1	chr12	48997274	49023776
PRKAG2_chr7_151551127_151882115	0/1	t0001	1570	78	7	17	31	7	15	copy fasta	PRKAG2	chr7	151551127	151882115