JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAG2_chr7_151551127_151882115	1/0	t0002	1570	65	20	13	16	2	13	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0003	1570	24	4	1	18	1	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0004	1570	15	1	2	9	2	1	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0005	1570	13	2	7	2	0	2	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0006	1569	9	8	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0007	1570	6	6	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0008	1570	5	5	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0009	1570	3	3	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0010	1570	3	3	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0011	1570	3	0	2	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0012	1570	3	0	3	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0013	1570	2	0	2	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0014	1570	2	0	0	0	0	2	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0015	1570	2	1	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0016	1570	2	2	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0017	1570	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0018	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0019	1569	1	0	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0020	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0021	1570	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0022	1596	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0023	1570	1	0	0	0	0	1	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0024	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0025	1571	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0026	1569	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0027	1570	1	0	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0028	1569	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0029	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0030	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0031	1570	1	0	0	1	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0032	1570	1	0	1	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG2_chr7_151551127_151882115	0/0	t0033	1570	1	1	0	0	0	0	copy fasta	PRKAG2	chr7	151551127	151882115
PRKAG3_chr2_218817308_218836803	0/0	t0001	919	199	80	26	85	1	7	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	1/1	t0002	919	185	5	45	91	13	29	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	t0003	919	14	13	1	0	0	0	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	t0004	919	1	0	0	0	0	1	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAG3_chr2_218817308_218836803	0/0	t0005	919	1	0	0	0	0	1	copy fasta	PRKAG3	chr2	218817308	218836803
PRKAR1A_chr17_68507430_68538431	0/0	t0001	3108	106	10	16	66	5	9	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0002	3109	99	22	15	47	3	12	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0003	3108	65	18	9	27	3	8	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	1/1	t0004	3108	60	22	14	12	3	7	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0005	3108	48	10	7	28	1	2	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0006	3108	5	0	0	4	0	1	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0007	3108	3	3	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0008	3109	3	0	1	2	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0009	3108	2	2	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0010	3108	2	2	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0011	3109	2	0	0	2	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0012	3109	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0013	3109	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431