JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAR1A_chr17_68507430_68538431	0/0	t0014	3108	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0015	3108	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0016	3108	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0017	3108	1	0	0	0	0	1	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0018	3072	1	0	0	0	1	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0019	3108	1	0	0	0	0	1	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0020	3108	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0021	3108	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0022	3109	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0023	3109	1	0	0	0	0	1	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0024	3109	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0025	3108	1	1	0	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0026	3108	1	0	1	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0027	3108	1	0	0	1	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR1A_chr17_68507430_68538431	0/0	t0028	3108	1	0	1	0	0	0	copy fasta	PRKAR1A	chr17	68507430	68538431
PRKAR2A_chr3_48741586_48852874	0/1	t0001	5277	60	28	8	17	2	4	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0002	5277	18	16	2	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	1/0	t0003	5278	17	2	4	0	7	3	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0004	5279	14	0	0	13	1	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0005	5278	11	8	0	2	0	1	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0006	5277	8	8	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0007	5279	8	0	5	0	2	1	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0008	5278	7	3	1	0	1	2	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0009	5276	3	3	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0010	5278	2	0	1	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0011	5277	1	0	0	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0012	5277	1	0	1	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0013	5280	1	0	0	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0014	5279	1	0	1	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0015	5279	1	0	0	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0016	5278	1	0	1	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0017	5276	1	0	0	0	1	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0018	5276	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0019	5280	1	0	0	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0020	5278	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0021	5277	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0022	5276	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0023	5278	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0024	5277	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0025	5279	1	0	0	1	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0026	5277	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0027	5277	1	1	0	0	0	0	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2A_chr3_48741586_48852874	0/0	t0028	5278	1	0	0	0	0	1	copy fasta	PRKAR2A	chr3	48741586	48852874
PRKAR2B_chr7_107039705_107166811	1/1	t0001	2433	223	62	35	93	9	22	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0002	2433	29	2	7	9	3	8	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0003	2433	13	7	2	0	2	2	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0004	2433	4	0	0	4	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0005	2433	3	3	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0006	2433	2	0	0	2	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0007	2433	2	0	0	0	0	2	copy fasta	PRKAR2B	chr7	107039705	107166811