JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKAR2B_chr7_107039705_107166811	0/0	t0008	2433	1	1	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0009	2433	1	1	0	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0010	2433	1	0	0	1	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0011	2433	1	0	1	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0012	2433	1	0	0	1	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKAR2B_chr7_107039705_107166811	0/0	t0013	2433	1	0	1	0	0	0	copy fasta	PRKAR2B	chr7	107039705	107166811
PRKCA_chr17_66297613_66815743	0/0	t0001	6953	10	1	1	5	2	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0002	6951	8	0	3	0	2	3	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0003	6952	8	4	0	1	1	2	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0004	6946	8	1	3	1	0	3	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0005	6954	7	0	0	5	1	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0006	6946	6	0	2	3	1	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0007	6946	5	0	4	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0008	6950	5	0	5	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0009	6954	4	4	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0010	6950	4	0	1	3	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/1	t0011	6953	4	0	0	3	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0012	6952	3	0	2	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0013	6947	3	1	2	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0014	6954	3	3	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0015	6950	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0016	6953	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0017	6949	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0018	6950	2	0	0	2	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0019	6952	2	1	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0020	6953	2	0	0	2	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0021	6946	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0022	6953	2	0	0	2	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0023	6952	2	0	0	1	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0024	6955	2	2	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0025	6951	2	0	0	2	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0026	6953	2	1	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0027	6954	2	0	0	1	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0028	6947	2	0	1	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0029	6949	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0030	6952	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0031	6953	1	0	0	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0032	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0033	6955	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0034	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0035	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0036	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0037	6947	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0038	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0039	6947	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0040	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0041	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0042	6953	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0043	6953	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0044	6946	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743