JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCA_chr17_66297613_66815743	0/0	t0045	6951	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0046	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	1/0	t0047	6946	1	0	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0048	6954	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0049	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0050	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0051	6949	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0052	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0053	6946	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0054	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0055	6951	1	0	0	0	1	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0056	6952	1	0	0	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0057	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0058	6946	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0059	6946	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0060	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0061	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0062	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0063	6953	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0064	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0065	6949	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0066	6950	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0067	6953	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0068	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0069	6954	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0070	6952	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0071	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0072	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0073	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0074	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0075	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0076	6946	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0077	6950	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0078	6955	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0079	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0080	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0081	6948	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0082	6947	1	0	0	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0083	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0084	6950	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0085	6950	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0086	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0087	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0088	6953	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0089	6947	1	0	1	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0090	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0091	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0092	6951	1	0	0	0	0	1	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0093	6954	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0094	6955	1	0	0	1	0	0	copy fasta	PRKCA	chr17	66297613	66815743