JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCA_chr17_66297613_66815743	0/0	t0095	6953	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0096	6951	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0097	6952	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0098	6954	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0099	6949	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCA_chr17_66297613_66815743	0/0	t0100	6946	1	1	0	0	0	0	copy fasta	PRKCA	chr17	66297613	66815743
PRKCB_chr16_23830983_24225611	0/0	t0001	5989	9	1	5	0	0	3	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0002	5994	9	1	6	0	0	2	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/1	t0003	5987	6	0	1	2	1	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0004	5989	5	0	1	4	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0005	6001	5	1	3	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0006	5985	4	4	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0007	6002	4	0	4	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0008	6007	4	4	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0009	6018	3	3	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0010	5983	3	3	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	1/0	t0011	5989	3	1	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0012	6009	3	3	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0013	6003	3	3	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0014	5981	2	0	1	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0015	5985	2	0	2	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0016	6020	2	0	0	2	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0017	5985	2	1	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0018	5996	2	0	1	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0019	5996	2	2	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0020	6005	2	0	0	2	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0021	6003	2	0	0	2	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0022	5986	2	0	0	0	0	2	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0023	5989	2	2	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0024	5996	2	2	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0025	5973	2	2	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0026	5985	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0027	5993	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0028	5979	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0029	6011	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0030	5985	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0031	5979	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0032	6011	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0033	6009	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0034	6011	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0035	6012	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0036	5990	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0037	6018	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0038	6001	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0039	6018	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0040	5983	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0041	5996	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0042	5993	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0043	5990	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0044	5991	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611