JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCB_chr16_23830983_24225611	0/0	t0045	5985	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0046	5983	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0047	6024	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0048	6014	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0049	6021	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0050	5998	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0051	5990	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0052	6015	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0053	6009	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0054	6006	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0055	5991	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0056	6003	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0057	5987	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0058	5981	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0059	5991	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0060	5985	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0061	5982	1	0	0	0	1	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0062	6007	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0063	6012	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0064	5986	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0065	6004	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0066	5990	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0067	5985	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0068	6010	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0069	6009	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0070	6009	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0071	5987	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0072	5990	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0073	5989	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0074	6011	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0075	5985	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0076	5985	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0077	6005	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0078	6012	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0079	5998	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0080	5978	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0081	5985	1	0	0	1	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0082	6002	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0083	6003	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0084	5987	1	0	0	0	0	1	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0085	5988	1	0	1	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0086	5996	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0087	5993	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCB_chr16_23830983_24225611	0/0	t0088	5983	1	1	0	0	0	0	copy fasta	PRKCB	chr16	23830983	24225611
PRKCD_chr3_53156209_53197717	0/0	t0001	804	180	43	34	72	10	21	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0002	804	70	7	27	21	3	12	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	1/0	t0003	803	22	15	3	1	2	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0004	806	14	12	1	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0005	804	7	0	0	0	0	7	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0006	805	6	2	2	2	0	0	copy fasta	PRKCD	chr3	53156209	53197717