JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCD_chr3_53156209_53197717	0/0	t0007	802	5	4	1	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0008	805	4	2	0	0	0	2	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/1	t0009	803	3	1	0	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0010	806	2	0	0	1	0	1	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0011	804	2	2	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0012	804	2	0	0	0	0	2	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0013	807	1	1	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0014	804	1	0	0	0	0	1	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0015	806	1	0	0	1	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0016	805	1	1	0	0	0	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCD_chr3_53156209_53197717	0/0	t0017	804	1	0	0	0	1	0	copy fasta	PRKCD	chr3	53156209	53197717
PRKCE_chr2_45646675_46192990	1/0	t0001	3536	54	11	16	12	3	11	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0002	3537	36	24	5	3	1	3	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0003	3537	14	0	6	2	1	5	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0004	3535	11	9	0	1	0	1	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0005	3536	8	0	4	0	3	1	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0006	3536	7	0	0	7	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0007	3536	7	6	1	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0008	3536	5	0	0	3	2	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0009	3537	3	2	1	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/1	t0010	3537	3	2	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0011	3535	3	3	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0012	3535	2	1	1	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0013	3535	2	2	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0014	3536	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0015	3537	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0016	3535	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0017	3536	1	0	0	0	0	1	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0018	3536	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0019	3536	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0020	3537	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0021	3537	1	0	1	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0022	3535	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0023	3536	1	0	0	1	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0024	3535	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0025	3536	1	1	0	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCE_chr2_45646675_46192990	0/0	t0026	3537	1	0	1	0	0	0	copy fasta	PRKCE	chr2	45646675	46192990
PRKCG_chr19_53877197_53912652	1/1	t0001	1056	313	51	64	136	14	46	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0002	1057	18	16	2	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0003	1056	15	13	2	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0004	1056	9	8	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0005	1056	4	4	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0006	1056	2	2	0	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCG_chr19_53877197_53912652	0/0	t0007	1041	1	0	1	0	0	0	copy fasta	PRKCG	chr19	53877197	53912652
PRKCH_chr14_61316579_61555976	1/0	t0001	1669	117	36	21	33	6	20	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0002	1669	38	24	8	4	0	2	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0003	1666	11	4	2	5	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0004	1669	8	0	2	6	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0005	1666	5	0	1	4	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0006	1669	4	2	1	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976