JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCH_chr14_61316579_61555976	0/0	t0007	1669	3	1	0	2	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0008	1669	3	3	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0009	1669	2	0	0	2	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0010	1669	2	0	0	2	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0011	1669	2	1	1	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0012	1669	2	0	0	2	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0013	1669	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0014	1666	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0015	1666	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0016	1666	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0017	1669	1	1	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0018	1669	1	1	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0019	1669	1	1	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0020	1669	1	0	1	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0021	1669	1	0	1	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/0	t0022	1669	1	0	0	1	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCH_chr14_61316579_61555976	0/1	t0023	1669	1	0	0	0	0	0	copy fasta	PRKCH	chr14	61316579	61555976
PRKCI_chr3_170217424_170310977	0/0	t0001	3098	107	14	20	50	7	16	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	1/1	t0002	3097	101	21	27	38	4	9	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0003	3097	25	0	15	6	0	4	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0004	3096	17	0	0	16	0	1	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0005	3098	11	11	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0006	3098	10	10	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0007	3097	9	0	0	9	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0008	3097	6	5	1	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0009	3098	5	0	0	5	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0010	3097	4	4	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0011	3097	4	0	0	3	1	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0012	3095	4	3	0	0	0	1	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0013	3095	4	4	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0014	3096	3	3	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0015	3097	2	2	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0016	3096	2	0	0	2	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0017	3098	2	2	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0018	3096	2	2	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0019	3097	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0020	3098	1	0	1	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0021	3098	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0022	3097	1	0	1	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0023	3097	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0024	3097	1	0	1	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0025	3096	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0026	3098	1	0	0	0	0	1	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0027	3098	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0028	3098	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0029	3098	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0030	3098	1	0	0	0	1	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0031	3098	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0032	3098	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0033	3097	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977