JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKCI_chr3_170217424_170310977	0/0	t0034	3097	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0035	3097	1	0	0	1	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0036	3097	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0037	3096	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0038	3096	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0039	3095	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0040	3095	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0041	3095	1	1	0	0	0	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCI_chr3_170217424_170310977	0/0	t0042	3097	1	0	0	0	1	0	copy fasta	PRKCI	chr3	170217424	170310977
PRKCQ_chr10_6422148_6585276	0/0	t0001	1133	63	1	10	35	3	14	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0002	1124	35	0	10	23	0	2	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0003	1133	31	16	5	4	2	4	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0004	1124	29	18	3	6	0	2	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0005	1135	19	15	3	0	1	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0006	1133	16	1	6	4	1	4	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0007	1124	13	1	8	3	1	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0008	1135	9	0	2	4	2	1	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0009	1124	5	5	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0010	1134	4	0	0	3	0	1	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0011	1124	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0012	1135	3	1	2	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0013	1135	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0014	1135	3	3	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0015	1125	2	0	0	2	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0016	1135	2	0	0	2	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0017	1135	2	0	0	0	0	2	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0018	1135	2	1	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0019	1124	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0020	1124	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0021	1124	1	0	0	1	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0022	1124	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0023	1135	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0024	1133	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0025	1133	1	1	0	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCQ_chr10_6422148_6585276	0/0	t0026	1133	1	0	1	0	0	0	copy fasta	PRKCQ	chr10	6422148	6585276
PRKCSH_chr19_11430635_11455968	1/1	t0001	489	269	65	51	109	13	29	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0002	489	62	20	14	20	3	5	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0003	489	5	5	0	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0004	489	4	4	0	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0005	489	2	2	0	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0006	489	2	0	0	2	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0007	489	1	0	0	1	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCSH_chr19_11430635_11455968	0/0	t0008	489	1	0	1	0	0	0	copy fasta	PRKCSH	chr19	11430635	11455968
PRKCZ_chr1_2045411_2190395	1/0	t0001	607	218	57	36	88	8	28	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0002	607	30	15	2	10	0	3	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/1	t0003	607	16	1	11	0	2	1	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0004	608	7	1	0	2	0	4	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0005	607	2	2	0	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0006	626	1	1	0	0	0	0	copy fasta	PRKCZ	chr1	2045411	2190395
PRKCZ_chr1_2045411_2190395	0/0	t0007	607	1	0	0	1	0	0	copy fasta	PRKCZ	chr1	2045411	2190395