Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP6V0A2_chr12_123707353_123766755	0/0	t0010	3935	4	4	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0011	3937	3	3	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0012	3937	3	2	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0013	3937	3	3	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0014	3937	3	0	0	1	2	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0015	3937	3	0	0	3	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0016	3937	2	1	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0017	3937	2	2	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	1/0	t0018	3937	2	0	0	0	1	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0019	3937	2	2	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0020	3937	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0021	3937	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0022	3937	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0023	3937	1	0	0	0	0	1	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0024	3937	1	0	0	0	0	1	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0025	3937	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0026	3937	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0027	3937	1	0	0	0	0	1	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0028	3937	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0029	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0030	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0031	3937	1	0	0	1	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0032	3937	1	0	0	0	0	1	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0033	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0034	3879	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0035	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0036	3937	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0037	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0038	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0039	3935	1	0	1	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A2_chr12_123707353_123766755	0/0	t0040	3937	1	1	0	0	0	0	copy fasta	ATP6V0A2	chr12	123707353	123766755
ATP6V0A4_chr7_138701294_138803196	1/0	t0001	614	308	57	52	146	14	38	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0002	614	25	12	5	6	1	1	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/1	t0003	614	13	0	7	0	1	4	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0004	614	10	10	0	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0005	614	6	4	1	0	1	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0006	614	3	2	0	0	0	1	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0007	614	3	2	1	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0008	614	2	1	1	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0009	614	1	1	0	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0010	614	1	0	0	0	1	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0011	614	1	0	0	0	0	1	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0012	614	1	0	0	0	0	1	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0013	614	1	0	1	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0A4_chr7_138701294_138803196	0/0	t0014	614	1	1	0	0	0	0	copy fasta	ATP6V0A4	chr7	138701294	138803196
ATP6V0B_chr1_43969960_43983295	1/1	t0001	370	330	69	63	154	11	31	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	t0002	373	44	2	4	34	1	3	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	t0003	370	12	11	1	0	0	0	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	t0004	370	8	8	0	0	0	0	copy fasta	ATP6V0B	chr1	43969960	43983295
ATP6V0B_chr1_43969960_43983295	0/0	t0005	370	2	2	0	0	0	0	copy fasta	ATP6V0B	chr1	43969960	43983295