JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKD3_chr2_37245502_37329833	0/0	t0020	3494	4	2	1	0	1	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0021	3497	4	0	0	4	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0022	3499	4	0	0	3	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0023	3488	3	0	1	2	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0024	3492	3	0	0	3	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0025	3486	2	2	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0026	3488	2	0	0	2	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0027	3485	2	0	0	0	1	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0028	3489	2	2	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0029	3499	2	0	1	0	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0030	3501	2	0	0	0	1	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0031	3488	1	0	0	0	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0032	3494	1	0	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0033	3495	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0034	3484	1	0	0	0	1	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0035	3498	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0036	3485	1	0	0	0	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0037	3484	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0038	3484	1	0	0	0	1	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0039	3488	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0040	3490	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0041	3495	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0042	3497	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0043	3498	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0044	3500	1	0	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0045	3502	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0046	3488	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0047	3488	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0048	3485	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0049	3497	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0050	3494	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0051	3488	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0052	3496	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0053	3493	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0054	3485	1	0	0	0	1	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0055	3489	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0056	3499	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	t0057	3502	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKDC_chr8_47768111_47965136	1/1	t0001	1073	180	62	31	51	4	30	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0002	1073	9	9	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0003	1073	5	5	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0004	1073	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0005	1073	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0006	1073	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	t0007	1073	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKG1_chr10_51069487_52303350	0/0	t0001	4555	19	11	5	0	1	2	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0002	4556	11	6	2	0	1	2	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0003	4556	10	6	4	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0004	4556	5	4	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0005	4556	5	4	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350