JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKG1_chr10_51069487_52303350	0/0	t0006	4556	3	3	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0007	4556	2	2	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0008	4556	2	2	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0009	4555	1	0	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0010	4555	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0011	4555	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0012	4555	1	0	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0013	4556	1	0	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0014	4556	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	t0015	4556	1	1	0	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG2_chr4_81082375_81220222	1/1	t0001	2634	109	18	33	40	1	15	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0002	2634	54	34	11	7	0	2	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0003	2634	49	5	7	31	1	5	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0004	2634	10	10	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0005	2634	8	6	2	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0006	2634	4	4	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0007	2634	3	3	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0008	2634	2	2	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0009	2634	2	2	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0010	2634	2	1	1	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0011	2634	1	1	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0012	2634	1	1	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0013	2634	1	1	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0014	2634	1	0	0	1	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0015	2634	1	0	0	1	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0016	2634	1	1	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKG2_chr4_81082375_81220222	0/0	t0017	2634	1	1	0	0	0	0	copy fasta	PRKG2	chr4	81082375	81220222
PRKN_chr6_161342417_162732766	0/0	t0001	2781	9	5	3	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0002	2781	6	5	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0003	2782	4	4	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0004	2782	2	1	1	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0005	2783	2	1	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0006	2782	1	0	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0007	2781	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0008	2780	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0009	2780	1	0	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0010	2781	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0011	2781	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0012	2780	1	0	0	0	0	1	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0013	2783	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	t0014	2781	1	1	0	0	0	0	copy fasta	PRKN	chr6	161342417	162732766
PRKRA_chr2_178426414_178456175	1/1	t0001	829	390	80	72	180	14	42	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0002	829	4	4	0	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0003	829	4	0	0	4	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0004	829	2	2	0	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0005	829	1	0	1	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0006	829	1	0	0	1	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0007	829	1	0	0	1	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0008	847	1	0	1	0	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRA_chr2_178426414_178456175	0/0	t0009	829	1	0	0	1	0	0	copy fasta	PRKRA	chr2	178426414	178456175