JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKRA_chr2_178426414_178456175	0/0	t0010	829	1	0	0	1	0	0	copy fasta	PRKRA	chr2	178426414	178456175
PRKRIP1_chr7_102391363_102431666	0/0	t0001	1605	179	34	37	77	7	24	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0002	1605	102	24	18	43	3	14	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0003	1605	40	5	8	17	3	7	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/1	t0004	1605	23	11	7	0	2	2	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0005	1605	13	0	4	9	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	1/0	t0006	1605	4	3	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0007	1605	3	3	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0008	1605	3	3	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0009	1605	2	0	0	2	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0010	1605	2	0	0	2	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0011	1605	2	2	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0012	1605	1	1	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0013	1605	1	0	0	0	0	1	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0014	1605	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0015	1605	1	1	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0016	1605	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0017	1605	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0018	1605	1	0	0	1	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0019	1605	1	1	0	0	0	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKRIP1_chr7_102391363_102431666	0/0	t0020	1605	1	0	0	0	1	0	copy fasta	PRKRIP1	chr7	102391363	102431666
PRKX_chrX_3599340_3718649	0/0	t0001	5002	10	6	0	4	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0002	5009	9	3	0	6	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0003	5004	6	4	1	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0004	5020	6	0	0	6	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0005	5009	5	0	0	5	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0006	5023	5	0	0	5	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0007	5002	5	1	0	2	1	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0008	5004	5	3	0	1	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0009	5025	4	0	0	4	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0010	5002	4	2	2	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0011	5000	4	0	2	0	1	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0012	5018	4	0	2	0	0	2	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0013	5009	3	3	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0014	5024	3	0	0	3	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0015	5004	3	0	1	1	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0016	5008	3	0	2	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/1	t0017	5007	3	0	0	0	1	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0018	5009	3	0	2	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0019	5007	3	0	0	3	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0020	5009	3	0	0	3	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0021	5021	3	0	2	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0022	5023	3	0	3	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0023	5020	3	0	0	3	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0024	5007	2	0	1	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0025	5010	2	2	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0026	5020	2	0	0	2	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0027	5025	2	0	0	2	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0028	5006	2	0	1	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0029	5014	2	0	0	0	0	2	copy fasta	PRKX	chrX	3599340	3718649