JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKX_chrX_3599340_3718649	0/0	t0030	5023	2	0	0	2	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0031	5018	2	0	1	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0032	4998	2	0	2	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0033	5022	2	0	1	0	1	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0034	5004	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0035	5011	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0036	5002	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0037	5004	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0038	5003	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0039	4997	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0040	5000	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0041	4996	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0042	4996	1	0	0	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0043	5000	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0044	5006	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0045	5003	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0046	5000	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0047	5010	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0048	5004	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0049	4998	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0050	5000	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0051	5004	1	0	0	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0052	5007	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0053	5009	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0054	5008	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0055	5004	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0056	5004	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0057	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0058	5006	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0059	5012	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0060	5012	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0061	5012	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0062	5007	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0063	5007	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0064	5009	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0065	5007	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0066	5009	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0067	5012	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0068	5014	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0069	5014	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0070	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0071	5022	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0072	5024	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0073	5021	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0074	5020	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0075	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0076	5019	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0077	5024	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0078	5027	1	0	1	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0079	5031	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649