JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRKX_chrX_3599340_3718649	0/0	t0130	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0131	5020	1	0	0	1	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0132	5013	1	0	0	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0133	5009	1	0	0	0	0	1	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0134	5002	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0135	5002	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0136	5010	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0137	5003	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0138	4996	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0139	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRKX_chrX_3599340_3718649	0/0	t0140	5018	1	1	0	0	0	0	copy fasta	PRKX	chrX	3599340	3718649
PRLHR_chr10_118584997_118600648	0/0	t0001	4275	191	24	17	119	3	28	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0002	4275	90	4	22	52	1	11	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0003	4275	32	0	10	14	4	4	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0004	4275	23	21	2	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0005	4274	22	7	11	3	1	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	1/0	t0006	4275	13	12	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0007	4274	12	5	6	0	1	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/1	t0008	4275	6	0	0	0	0	5	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0009	4275	5	0	0	5	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0010	4275	4	0	4	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0011	4274	3	2	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0012	4275	3	0	3	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0013	4274	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0014	4274	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0015	4275	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0016	4275	2	0	0	0	2	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0017	4275	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0018	4276	2	2	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0019	4275	2	0	2	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0020	4275	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0021	4274	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0022	4274	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0023	4274	1	0	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0024	4275	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0025	4275	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0026	4274	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0027	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0028	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0029	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0030	4274	1	0	0	0	0	1	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0031	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0032	4274	1	0	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0033	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0034	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0035	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0036	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0037	4275	1	0	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0038	4275	1	0	0	0	0	1	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0039	4275	1	0	1	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648