JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRLHR_chr10_118584997_118600648	0/0	t0040	4276	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0041	4276	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0042	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0043	4275	1	0	0	1	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0044	4274	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLHR_chr10_118584997_118600648	0/0	t0045	4274	1	1	0	0	0	0	copy fasta	PRLHR	chr10	118584997	118600648
PRLR_chr5_35050702_35235487	1/0	t0001	9713	58	11	13	24	0	9	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0002	9716	42	13	5	19	1	4	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/1	t0003	9712	12	1	4	3	0	3	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0004	9716	9	6	0	3	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0005	9716	6	6	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0006	9713	4	4	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0007	9716	4	3	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0008	9716	4	4	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0009	9718	4	4	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0010	9716	3	3	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0011	9713	3	2	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0012	9716	3	0	3	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0013	9716	3	3	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0014	9714	3	0	0	3	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0015	9713	2	0	2	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0016	9712	2	2	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0017	9716	2	2	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0018	9711	2	2	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0019	9716	2	0	0	1	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0020	9716	2	2	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0021	9713	2	0	2	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0022	9716	2	1	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0023	9713	2	0	1	0	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0024	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0025	9713	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0026	9716	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0027	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0028	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0029	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0030	9712	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0031	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0032	9713	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0033	9716	1	0	0	0	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0034	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0035	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0036	9716	1	0	0	0	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0037	9716	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0038	9716	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0039	9716	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0040	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0041	9713	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0042	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0043	9713	1	0	0	0	1	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0044	9713	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487