JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRLR_chr5_35050702_35235487	0/0	t0045	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0046	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0047	9713	1	0	0	0	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0048	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0049	9715	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0050	9716	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0051	9716	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0052	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0053	9712	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0054	9712	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0055	9713	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0056	9712	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0057	9716	1	1	0	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0058	9713	1	0	0	0	0	1	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0059	9712	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0060	9713	1	0	0	1	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRLR_chr5_35050702_35235487	0/0	t0061	9716	1	0	1	0	0	0	copy fasta	PRLR	chr5	35050702	35235487
PRL_chr6_22282246_22302036	1/1	t0001	211	439	96	78	199	14	50	copy fasta	PRL	chr6	22282246	22302036
PRL_chr6_22282246_22302036	0/0	t0002	211	7	0	0	7	0	0	copy fasta	PRL	chr6	22282246	22302036
PRM1_chr16_11275841_11286330	1/1	t0001	244	409	97	74	170	18	48	copy fasta	PRM1	chr16	11275841	11286330
PRM1_chr16_11275841_11286330	0/0	t0002	244	1	1	0	0	0	0	copy fasta	PRM1	chr16	11275841	11286330
PRM2_chr16_11270639_11281480	0/1	t0001	372	384	83	77	162	16	45	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	1/0	t0002	372	12	10	1	0	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	t0003	372	2	0	0	2	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	t0004	372	1	0	0	1	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	t0005	372	1	0	0	1	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	t0006	372	1	1	0	0	0	0	copy fasta	PRM2	chr16	11270639	11281480
PRM2_chr16_11270639_11281480	0/0	t0007	372	1	0	0	0	0	1	copy fasta	PRM2	chr16	11270639	11281480
PRM3_chr16_11268199_11278629	0/0	t0001	120	287	34	51	158	14	30	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	1/1	t0002	120	115	48	25	22	2	16	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	t0003	121	9	7	2	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRM3_chr16_11268199_11278629	0/0	t0004	121	3	3	0	0	0	0	copy fasta	PRM3	chr16	11268199	11278629
PRMT1_chr19_49672271_49693447	1/1	t0001	213	397	90	80	162	14	49	copy fasta	PRMT1	chr19	49672271	49693447
PRMT1_chr19_49672271_49693447	0/0	t0002	213	1	0	0	0	0	1	copy fasta	PRMT1	chr19	49672271	49693447
PRMT2_chr21_46630674_46670124	0/0	t0001	1053	139	39	19	64	3	14	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/1	t0002	1053	90	8	27	31	9	14	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0003	1053	80	0	8	60	2	10	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0004	1053	70	36	10	19	0	5	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	1/0	t0005	1053	29	9	5	12	0	2	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0006	1053	4	4	0	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0007	1053	3	0	3	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0008	1053	3	1	2	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0009	1053	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0010	1053	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0011	1053	1	0	1	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0012	1053	1	1	0	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0013	1053	1	0	0	0	0	1	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0014	1053	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0015	1053	1	0	1	0	0	0	copy fasta	PRMT2	chr21	46630674	46670124
PRMT2_chr21_46630674_46670124	0/0	t0016	1053	1	0	0	1	0	0	copy fasta	PRMT2	chr21	46630674	46670124