JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRMT3_chr11_20382716_20514338	0/1	t0001	955	222	56	44	76	14	31	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	1/0	t0002	957	130	15	18	93	0	3	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	t0003	957	17	17	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	t0004	957	7	7	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	t0005	957	2	2	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	t0006	957	1	0	0	1	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT3_chr11_20382716_20514338	0/0	t0007	955	1	1	0	0	0	0	copy fasta	PRMT3	chr11	20382716	20514338
PRMT5_chr14_22915529_22934376	1/1	t0001	391	345	91	66	140	12	34	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	t0002	391	9	5	2	0	0	2	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	t0003	391	5	0	5	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	t0004	391	4	3	1	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT5_chr14_22915529_22934376	0/0	t0005	391	1	1	0	0	0	0	copy fasta	PRMT5	chr14	22915529	22934376
PRMT6_chr1_107051674_107064294	1/1	t0001	1494	316	80	47	138	14	35	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0002	1494	53	0	10	30	4	9	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0003	1494	8	0	8	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0004	1499	5	0	0	5	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0005	1494	3	0	0	3	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0006	1494	3	3	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0007	1494	1	1	0	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT6_chr1_107051674_107064294	0/0	t0008	1494	1	0	1	0	0	0	copy fasta	PRMT6	chr1	107051674	107064294
PRMT7_chr16_68306019_68363584	0/1	t0001	1685	117	27	30	43	3	13	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0002	1685	57	25	12	13	1	6	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	1/0	t0003	1660	51	1	14	24	2	9	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0004	1685	15	10	0	0	0	5	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0005	1685	10	10	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0006	1685	8	8	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0007	1685	6	5	1	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0008	1685	4	0	0	4	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0009	1660	3	0	1	2	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0010	1660	2	0	0	2	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0011	1685	2	2	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0012	1685	2	0	0	2	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0013	1685	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0014	1685	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0015	1685	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0016	1685	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0017	1660	1	0	0	1	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0018	1685	1	1	0	0	0	0	copy fasta	PRMT7	chr16	68306019	68363584
PRMT7_chr16_68306019_68363584	0/0	t0019	1685	1	0	0	0	0	1	copy fasta	PRMT7	chr16	68306019	68363584
PRMT8_chr12_3486203_3598973	1/1	t0001	1215	303	65	55	134	16	31	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0002	1215	37	16	4	15	0	2	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0003	1215	8	0	8	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0004	1221	3	0	0	3	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0005	1221	2	0	0	2	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0006	1215	2	2	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0007	1215	2	2	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0008	1215	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0009	1215	1	0	1	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0010	1215	1	0	0	0	0	1	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0011	1215	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973