Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP6V0C_chr16_2508952_2525218	1/1	t0001	626	298	75	67	112	6	36	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0002	626	14	0	0	14	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0003	626	12	12	0	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0004	626	6	4	2	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0005	626	2	0	2	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0006	626	1	1	0	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0007	626	1	1	0	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0008	626	1	1	0	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0C_chr16_2508952_2525218	0/0	t0009	626	1	0	1	0	0	0	copy fasta	ATP6V0C	chr16	2508952	2525218
ATP6V0D1_chr16_67433019_67486157	1/1	t0001	581	101	28	21	27	5	18	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0002	581	26	23	0	3	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0003	581	19	15	3	0	1	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0004	577	7	6	1	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0005	581	5	3	0	0	0	2	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0006	581	4	4	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0007	583	3	3	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0008	583	3	3	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0009	581	1	0	1	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0010	577	1	0	0	1	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0011	581	1	0	0	1	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0012	581	1	1	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0013	581	1	1	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D1_chr16_67433019_67486157	0/0	t0014	581	1	1	0	0	0	0	copy fasta	ATP6V0D1	chr16	67433019	67486157
ATP6V0D2_chr8_86093910_86159225	1/0	t0001	1318	238	69	33	103	4	28	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/1	t0002	1321	79	12	20	30	2	14	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0003	1318	30	0	7	23	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0004	1318	6	5	1	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0005	1318	4	3	1	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0006	1318	1	0	0	0	0	1	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0007	1323	1	0	0	0	0	1	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0D2_chr8_86093910_86159225	0/0	t0008	1316	1	1	0	0	0	0	copy fasta	ATP6V0D2	chr8	86093910	86159225
ATP6V0E1_chr5_172978771_173040445	0/0	t0001	1174	228	52	49	87	8	32	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0002	1174	39	15	6	11	2	5	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0003	1174	7	5	2	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0004	1174	4	4	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0005	1174	3	3	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0006	1174	3	3	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0007	1174	2	2	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0008	1174	2	2	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0009	127	1	0	0	0	0	1	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0010	1174	1	0	1	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0011	1174	1	1	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E1_chr5_172978771_173040445	0/0	t0012	1174	1	1	0	0	0	0	copy fasta	ATP6V0E1	chr5	172978771	173040445
ATP6V0E2_chr7_149868969_149885695	1/0	t0001	1478	181	11	33	108	7	21	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/1	t0002	1478	141	18	30	65	10	17	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	t0003	1478	20	7	1	10	1	1	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	t0004	1478	12	10	2	0	0	0	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	t0005	1478	8	7	1	0	0	0	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	t0006	1478	8	1	7	0	0	0	copy fasta	ATP6V0E2	chr7	149868969	149885695
ATP6V0E2_chr7_149868969_149885695	0/0	t0007	1478	8	8	0	0	0	0	copy fasta	ATP6V0E2	chr7	149868969	149885695