JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRMT8_chr12_3486203_3598973	0/0	t0012	1215	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0013	1215	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT8_chr12_3486203_3598973	0/0	t0014	1215	1	1	0	0	0	0	copy fasta	PRMT8	chr12	3486203	3598973
PRMT9_chr4_147632785_147689163	0/1	t0001	924	157	72	16	49	4	15	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0002	924	47	8	1	34	1	3	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0003	924	5	5	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0004	924	4	2	2	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0005	924	2	0	1	0	1	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0006	920	2	0	1	1	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	1/0	t0007	924	2	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0008	924	1	0	1	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0009	924	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRMT9_chr4_147632785_147689163	0/0	t0010	924	1	1	0	0	0	0	copy fasta	PRMT9	chr4	147632785	147689163
PRND_chr20_4716909_4733460	0/0	t0001	3448	14	1	11	2	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0002	3464	8	0	0	8	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0003	3448	7	0	2	5	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0004	3451	7	1	1	4	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0005	3459	6	1	1	0	1	3	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0006	3452	6	0	0	6	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0007	3449	6	0	1	5	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0008	3449	6	0	0	6	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0009	3466	5	0	0	5	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0010	3463	4	0	0	0	1	3	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0011	3466	4	0	0	3	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0012	3466	4	0	1	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0013	3474	4	2	2	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0014	3448	4	0	2	1	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0015	3449	4	0	1	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0016	3450	4	0	3	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0017	3471	4	4	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0018	3465	3	0	0	2	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0019	3465	3	3	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0020	3447	3	0	2	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0021	3452	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0022	3464	3	1	1	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0023	3448	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0024	3462	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0025	3448	3	0	1	0	2	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0026	3448	3	0	2	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0027	3471	3	3	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0028	3451	3	0	2	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0029	3451	3	0	3	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0030	3448	3	0	2	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0031	3448	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0032	3449	3	0	0	3	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0033	3466	3	1	1	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0034	3450	3	0	1	2	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0035	3452	2	0	0	2	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0036	3441	2	1	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0037	3457	2	2	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460