JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRND_chr20_4716909_4733460	0/0	t0188	3452	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0189	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0190	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0191	3468	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0192	3466	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0193	3452	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0194	3452	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0195	3452	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0196	3467	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0197	3468	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0198	3448	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0199	3448	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0200	3448	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0201	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0202	3465	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0203	3463	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0204	3459	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0205	3462	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0206	3463	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0207	3448	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0208	3460	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0209	3465	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0210	3453	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0211	3470	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0212	3471	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0213	3455	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0214	3455	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0215	3448	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0216	3463	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0217	3447	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0218	3448	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0219	3466	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0220	3452	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0221	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0222	3452	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0223	3453	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0224	3450	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0225	3451	1	0	0	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0226	3462	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0227	3466	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0228	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0229	3442	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0230	3447	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0231	3463	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0232	3451	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0233	3466	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0234	3465	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0235	3451	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0236	3468	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0237	3456	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460