JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRND_chr20_4716909_4733460	0/0	t0238	3459	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0239	3448	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0240	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0241	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0242	3463	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0243	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0244	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0245	3451	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0246	3451	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0247	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0248	3466	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0249	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0250	3451	1	0	0	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0251	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0252	3465	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0253	3467	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0254	3468	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0255	3466	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0256	3466	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0257	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	1/0	t0258	3451	1	0	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0259	3451	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0260	3443	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0261	3443	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0262	3458	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0263	3462	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0264	3447	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0265	3447	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0266	3447	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0267	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0268	3448	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0269	3463	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0270	3448	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0271	3448	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0272	3448	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0273	3463	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0274	3460	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0275	3448	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0276	3448	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0277	3448	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0278	3448	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0279	3448	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0280	3462	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0281	3462	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0282	3448	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0283	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0284	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0285	3465	1	0	1	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0286	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0287	3461	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460