JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRND_chr20_4716909_4733460	0/0	t0288	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0289	3463	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0290	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0291	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0292	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0293	3449	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0294	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0295	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0296	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0297	3465	1	0	0	0	1	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0298	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0299	3465	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0300	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0301	3462	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0302	3464	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0303	3450	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0304	3465	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0305	3451	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0306	3451	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0307	3467	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0308	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0309	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0310	3451	1	0	0	1	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0311	3471	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0312	3458	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0313	3458	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0314	3470	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0315	3473	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0316	3452	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0317	3451	1	1	0	0	0	0	copy fasta	PRND	chr20	4716909	4733460
PRND_chr20_4716909_4733460	0/0	t0318	3451	1	0	0	0	0	1	copy fasta	PRND	chr20	4716909	4733460
PRNP_chr20_4681456_4706588	1/1	t0001	1674	291	61	67	107	15	39	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0002	1674	16	13	2	0	0	1	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0003	1674	4	3	0	0	1	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0004	1674	3	3	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0005	1674	2	2	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0006	1674	2	2	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0007	1674	2	1	0	0	1	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0008	1674	2	1	1	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0009	1674	2	2	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0010	1674	1	0	1	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0011	1674	1	1	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0012	1674	1	1	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0013	1674	1	0	0	1	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0014	1674	1	1	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0015	1674	1	1	0	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0016	1674	1	0	1	0	0	0	copy fasta	PRNP	chr20	4681456	4706588
PRNP_chr20_4681456_4706588	0/0	t0017	1674	1	0	0	0	1	0	copy fasta	PRNP	chr20	4681456	4706588
PROB1_chr5_139385592_139400104	1/1	t0001	1466	329	74	62	136	12	43	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0002	1466	9	0	0	9	0	0	copy fasta	PROB1	chr5	139385592	139400104