JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROB1_chr5_139385592_139400104	0/0	t0003	1466	2	2	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0004	1466	1	0	1	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0005	1466	1	0	1	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0006	1466	1	0	0	1	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0007	1466	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0008	1466	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0009	1466	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0010	1466	1	0	0	0	0	1	copy fasta	PROB1	chr5	139385592	139400104
PROB1_chr5_139385592_139400104	0/0	t0011	1466	1	1	0	0	0	0	copy fasta	PROB1	chr5	139385592	139400104
PROCA1_chr17_28698197_28716888	1/1	t0001	590	315	74	65	122	8	44	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	t0002	590	3	0	3	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCA1_chr17_28698197_28716888	0/0	t0003	590	2	2	0	0	0	0	copy fasta	PROCA1	chr17	28698197	28716888
PROCR_chr20_35167072_35182362	0/0	t0001	633	239	86	43	65	13	32	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	1/1	t0002	633	149	10	31	89	3	14	copy fasta	PROCR	chr20	35167072	35182362
PROCR_chr20_35167072_35182362	0/0	t0003	633	4	4	0	0	0	0	copy fasta	PROCR	chr20	35167072	35182362
PROC_chr2_127413427_127434242	1/1	t0001	384	273	43	51	143	7	27	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	t0002	384	142	54	29	38	3	18	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	t0003	384	1	0	0	0	0	1	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	t0004	384	1	0	0	1	0	0	copy fasta	PROC	chr2	127413427	127434242
PROC_chr2_127413427_127434242	0/0	t0005	384	1	1	0	0	0	0	copy fasta	PROC	chr2	127413427	127434242
PRODH2_chr19_35794988_35817845	1/0	t0001	91	339	81	59	155	11	32	copy fasta	PRODH2	chr19	35794988	35817845
PRODH2_chr19_35794988_35817845	0/1	t0002	91	89	15	21	33	1	18	copy fasta	PRODH2	chr19	35794988	35817845
PRODH_chr22_18907781_18941293	0/1	t0001	401	367	74	77	156	15	44	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0002	401	33	18	2	8	1	4	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0003	401	3	0	0	3	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0004	401	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0005	401	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0006	401	1	0	0	1	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0007	401	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0008	401	1	1	0	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PRODH_chr22_18907781_18941293	0/0	t0009	401	1	0	1	0	0	0	copy fasta	PRODH	chr22	18907781	18941293
PROK1_chr1_110446149_110462358	1/1	t0001	1076	388	58	69	207	15	37	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0002	1076	49	25	4	14	0	6	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0003	1076	12	11	1	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0004	1076	1	0	0	1	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0005	1076	1	0	0	0	0	1	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0006	1076	1	1	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0007	1076	1	0	0	0	1	0	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0008	1076	1	0	0	0	0	1	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0009	1076	1	0	0	0	0	1	copy fasta	PROK1	chr1	110446149	110462358
PROK1_chr1_110446149_110462358	0/0	t0010	1076	1	1	0	0	0	0	copy fasta	PROK1	chr1	110446149	110462358
PROK2_chr3_71766655_71790148	0/0	t0001	1166	242	28	47	128	12	27	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0002	1167	70	15	8	35	1	11	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	1/0	t0003	1166	27	23	3	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/1	t0004	1166	21	2	5	10	1	2	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0005	1166	20	6	3	3	0	8	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0006	1166	13	0	2	11	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0007	1165	12	12	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0008	1168	12	0	2	10	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0009	1165	6	3	0	2	0	1	copy fasta	PROK2	chr3	71766655	71790148